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* Rename {model,util_model}.{h,cpp} files to match class names
* Fix alreadyVisited() issue in TheoryEngine
* Remove spurious Message that causes compliance issues
* Update copyrights, fix public/private markings in headers
* minor comment fixes
* remove EXTRACT_OP as a special-case in typechecker
* note about rewriters in theoryskel readme
* Clean up some compiler warnings
* Code typos and spacing
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* This is a feature that Dejan and I want for the upcoming tutorial.
It allows rapid prototyping of new decision procedure implementations
(which we may choose to demonstrate), and a new --use-theory command-line
option to select from different available implementations. It has no
affect on the current set of theories, as no "alternates" are defined.
* Also update the new-theory script, which was broken and incomplete.
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files can be added to it without modifying the script.
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